The advantage of usingÄistiller is that it provides comprehensive support for quantitation. Mascot Distiller can also be used as a data import filter by Mascot Daemon for batch processing of files. Mascot Distiller can process Waters raw data, both DDA and MS^E. ProteinLynx Global Server is the Waters software environment for proteomics project management, protein quantification, and protein identification and characterization. There are several options available for processing Waters raw data into peak lists for searching with Mascot. MassLynx is the data acquisition software for Waters mass spectrometers.
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